PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022770-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 655aa    MW: 70985.2 Da    PI: 7.4084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022770-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.9e-08337381144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         r++W++ Ed  l+ av++ G g+W+ I r      Rt+ q+  rw
  WALNUT_00022770-RA 337 RKPWSEAEDMELIAAVQKCGEGNWANILRGDFkGDRTATQLSQRW 381
                         789************************984223588888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-12332384IPR009057Homeodomain-like
PROSITE profilePS5129414.778332389IPR017930Myb domain
SuperFamilySSF466891.72E-12333387IPR009057Homeodomain-like
SMARTSM007179.2E-9336387IPR001005SANT/Myb domain
PfamPF002491.6E-6337381IPR001005SANT/Myb domain
CDDcd116602.70E-14338386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MVEKTKKLMK GSLSEEDIST LLQRYTATTV LALLQEVAHC PDVKIDWNAL VKNTSTGISD  60
AREYQILWRH LAFRYTATTV LALLQEVAHC PDVKIDWNAL VKNTSTGISD AREYQILWRH  120
LAYRHALLDQ YFDMWCFHGY TATTVLALLQ EVAHCPDVKI DWNALVKNTS TGISDAREYQ  180
ILWRHLAYRH ALLDQYFDMW CFHGVHLLQK SCPQNSALVP HDDDDSDLEY EVEAFPTVSS  240
DTSTEAAASV KVLIASGLPS ECSLPASSIV EAPLTINIPN GWSSRGPSQN SEATCSMQGT  300
NITIPVSLQK MPLPAATPVE GLDANGSASS MPPRRKRKPW SEAEDMELIA AVQKCGEGNW  360
ANILRGDFKG DRTATQLSQR WAIIRKRRDN LNVGPNSTRS QLSEEWRAAH HAMSLALDMP  420
IRNLPVARPA GMNTTRNSVL PPPALPSSVL QVQDQPYECS NATKSSAIGS LGSISKSQSS  480
IKPKTKPTLG SDSALRATAV AAGARIASPS DAASFIKATQ AKSAVHLKPT DGSSTKLSMP  540
GGVSTQSDTQ TNVRYICPGL EAKPCSSYNA GNVTNTAVHT GSVKAVLPTV QHASSSFAIP  600
SNLSSSEQAN AVSSTLPSEV LPKQEVMTAE EIKVSKSGYA LKEVVQDGAR ASQHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338PRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086659.11e-164hypothetical protein L484_002900
TrEMBLW9QIL61e-163W9QIL6_9R
STRINGVIT_18s0001g07620.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-74MYB_related family protein